New microscopy technique reveals dynamic structure of beta-amyloid protein

Beta-amyloid (A-beta) aggregates are tangles of proteins that are associated with neurodegenerative diseases such as Alzheimer’s disease. Despite their constant presence in the spotlight, however, researchers have not been able to fully understand how beta-amyloid aggregates form and break down.

“How A-beta behaves in various environments, including the human brain, is elusive,” said Brian Sun, an electrical systems and engineering alumnus at Washington University in St. Louis who is now an MD/PhD student at the School of Medicine.

“There is an understanding of growth and decline that is not fully developed,” he added.

That’s about to change, thanks to recently published research by Sun and colleagues in the lab of Associate Professor Matthew Lew in the Preston M. Green Department of Electrical and Systems Engineering (ESE) at WashU’s McKelvey School of Engineering.

In a novel work, Sun and his colleagues were able to measure the assemblies of amyloid fibril beta sheets, the underlying beams of the protein conglomerate, as they transformed. Previous high-resolution microscopy studies obtained only static images.

We wanted to look specifically at the dynamics of the underlying structure of A-beta that might be responsible for the changes we observe, not just changes in the overall shape.

Brian Sun

Lew uses Lego as an analogy, noting that current imaging technology shows you the complete Lego building, but gives no insight into how each individual brick is arranged.

“Individual proteins are constantly changing in response to their environment,” Lew said. “It’s like some Lego bricks changing the shape of other bricks. The changing architecture of proteins and the aggregates that assemble together lead to the complexity of neurodegenerative diseases.”

The Lew lab has developed a new type of imaging technology that allows them to see the orientation and other minute details of nanostructures in biological systems that were previously invisible. Their technique — single-molecule orientation-localization microscopy (SMOLM) — uses flashes of light from chemical probes to visualize the peptide sheets underlying Aβ42, a type of A-beta peptide.

Using SMOLM allows them to look at the individual orientation of the underlying beta sheets to see the relationship between their organization and how it relates to the overall structure of the amyloid protein.

Several ways to renovate

The Aβ42 protein is constantly evolving, and the first step is to try to find a method, model or scheme of action to predict the behavior of the protein.

Now that the Lew lab can make these measurements, they’ve made some intuitive observations and found some surprises hidden in the architecture of the amyloid-beta protein.

As expected, stable Aβ42 structures tend to retain stable underlying beta sheets. Growing structures have underlying beta sheets that become more defined and rigid as growth continues. Decaying structures have increasingly disordered and less rigid beta sheets. But they also discovered more than one way that Aβ42 can renovate itself.

“There are several different ways for Aβ42 structures to remain stable, or to grow and break down,” Sun said.

The researchers also found that Aβ42 can grow and degrade in unexpected ways. For example, Aβ42 can grow and degrade in ways that preserve the underlying structure; sometimes there is growth where peptides accumulate, but the orientations of the underlying beta sheets do not change. In other cases, Aβ42 undergoes “stable decay,” where the opposite occurs, i.e., the peptides disappear, but the beta sheet structure remains. Finally, Aβ42 beta sheets sometimes rearrange and change orientation without causing immediate changes in the overall shape. These nanostructural reorganizations may predispose to future large-scale remodeling.

“Because SMOLM can track the underlying organization of Aβ42 and not just its shape, we can see different types of remodeling subtypes that are not visible by orientation-free and diffraction-limited imaging modalities,” Sun said.

If all this sounds a bit vague, keep in mind that this is the first attempt to analyze these ever-changing nanoscale structures. There was no previous work to compare notes to, which makes it all the more remarkable that Sun came up with this work while juggling COVID-19 lockdown restrictions and his undergraduate program at WashU, which he completed in three years. It paves the way for him and others to begin to truly understand amyloid architecture.

He will likely end up answering more such questions during the graduate phase of his MD/PhD training, where he plans to design nanoscale imaging systems and sensors that could reveal the hidden mechanisms of hard-to-treat diseases.

Sun thanks WashU’s ESE department and the Lew Lab for the rigorous training that made this study and academic journey possible, as well as WashU’s MSTP for supporting his continued research after graduation. “I’m really glad I went through this journey,” he said.

Sun B, Ding T, Zhou W, Porter TS, Lew MD. Single-molecule orientation imaging reveals the nanoarchitecture of growing and decomposing amyloid fibrils. Nano Lett. 2024, 24, 24, 7276–7283. DOI: https://doi.org/10.1021/acs.nanolett.4c01263.

Research reported in this publication was supported by the National Institute of General Medical Sciences of the National Institutes of Health under Award Number R35GM124858.